Publications

 

Pirttilä AM and Frank AC. Endophytes of forest trees: biology and applications (Springer 2018). In press.

Frank, AC. The genomes of endophytic bacteria. In Endophytes of forest trees: biology and applications (eds Pirttilä and Frank, Springer 2018, in press).

Oses, R, Frank, AC, Valenzuela, S, and Rodriguez, J. Nitrogen fixing endophytes in forest trees. In Endophytes of forest trees: biology and applications (eds Pirttilä and Frank, Springer 2018, in press).

Frank, AC, Saldierna Guzmán, JP, and Shay, JE (2017). Transmission of Bacterial Endophytes. Microorganisms,  10:5 [PubMed].

Carrell, AC, Carper, DL, and Frank, AC (2016). Subalpine conifers in different geographical locations host highly similar foliar bacterial endophyte communities. FEMS Microbiology Ecology, 92:8 [PubMed].

Rua, MR, Wilson, EC,  Steele, S, Munters, AR,  Hoeksema, JD, and Frank, AC (2016).  Associations between ectomycorrhizal fungi and bacterial needle endophytes in Pinus radiata: implications for biotic selection of microbial communities. Frontiers in Microbiology, 7:399 [PubMed].

Moyes, AB, Kueppers, LM, Pett-Ridge J, Carper, DL, Vandehey, N, O’Neil, J and Frank, AC (2016). Evidence for foliar endophytic nitrogen-fixation in a widely distributed subalpine conifer. New Phytologist, 210: 657-668 [PubMed]. Commentary by Nina Wurzburg.

Carrell, AA  and Frank, AC (2015). Bacterial endophyte communities in the foliage of coast redwood and giant sequoia. Frontiers in Microbiology, section Plant Biotic Interactions. 6:1008 [PubMed]

Koskimäki, JJ, Pirttilä, AM, Ihantola, AM, Halonen, O and Frank, AC (2015). The intracellular Scots pine shoot symbiont Methylobacterium extorquens DSM13060 aggregates around the host nucleus and encodes eukaryote-like proteins. mBio, 6: mBio.00039-15 [PubMed]

Carrell, AA and Frank, AC. Pinus flexilis and Picea engelmannii share a simple and consistent needle endophyte microbiota with a potential role in nitrogen fixation (2014). Frontiers in Microbiology.  5:333  [PubMed]

Berglund EA and Frank AC. Horizontal gene transfer of host-adaptability genes. In Horizontal gene transfer in microorganisms (Ed Francino MP, Horizon Scientific Press, 2012).

Pirttilä AM and Frank AC. Endophytes of forest trees: biology and applications (Springer 2011). [Book]

Frank, AC. The genomes of endophytic bacteria. In Endophytes of forest trees: biology and applications (eds Pirttilä and Frank, Springer 2011).

Frank, AC and Wolfe, KH (2009). Evolutionary capture of viral and plasmid DNA by yeast nuclear chromosomes. Eukaryotic Cell 8:1521-31. [PubMed]

Berglund, EA, Frank AC, Alexandra Calteau, A, Vinnere Pettersson O, Eriksson, AS, Kristina Näslund, K, Holmberg, M, Lindroos, H, Andersson, SG (2009). Run-off replication of host-adaptability genes is associated with gene transfer agents in the genome of mouse-infecting Bartonella grahamii. PLoS Genetics 5:e1000546. [PubMed]

Nystedt B, Frank AC, Thollesson M, Andersson SG. Diversifying selection and concerted evolution of a Type IV secretion system in Bartonella (2008). Molecular Biology and Evolution 25:287-300. [PubMed]

Scannell DR, Frank AC, Conant GC, Byrne KP, Woolfit M, Wolfe KH (2007). Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication. Proceedings of the National Academy of Sciences 104:8397-402. [PubMed]

Frank AC, Alsmark CM, Thollesson M, Andersson SG (2005). Functional divergence and horizontal transfer of type IV secretion systems. Molecular Biology and Evolution 22:1325-36. [PubMed]

Frank AC, Berglund E, Andersson SG: The genomes of pathogenic Bartonella species. In Pathogenomics (eds Hacker J and Dobrint U, Wiley-WGM 2005).

Bossau B, Karlberg EO, Frank AC, Legault BA, Andersson SG (2004). Computational inference of scenarious for alpha-proteobacterial genome evolution. Proceedings of the National Academy of Sciences 101:9722-7. [PubMed]

Alsmark CM, Frank AC, Karlberg EO, Legault BA, Ardell DH, Canbäck B, Eriksson AS, Näslund AK, Handley SA, Huvet M, La Scola B, Holmberg M, Andersson SG (2004). The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae. Proceedings of the National Academy of Sciences 101:9716-21. [PubMed]

Frank AC, Amiri H, Andersson SG (2002). Genome deterioration: loss of repeated sequences and accumulation of junk DNA. Genetica 115:1-12. [PubMed]

Frank AC, Lobry JR (2000). Oriloc: prediction of replication boundaries in unannotated bacterial chromosomes. Bioinformatics 16:560-1. [PubMed]

Frank AC, Lobry JR (1999). Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms. Gene 238:65-77. [PubMed]

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